Cognato, A.I. 2015. Biology, systematics, and evolution of Ips. Pp. 351-370. In: Vega, F.E. and R.W. Hofstetter (Eds). Bark Beetles: Biology and Ecology of Native and Invasive Species. Elsevier Inc., San Diego.
DeMarco, B.B. and A.I. Cognato. 2015. Phylogenetic analysis of Aphaenogastersupports the resurrection of Novomessor (Hymenoptera: Formicidae). Annals of the Entomological Society of America, in press.
Hulcr, J., T.H. Atkinson, A.I. Cognato, B.H. Jordal, and D.D. McKenna. 2015. Morphology, Taxonomy and Phylogenetics of Bark Beetles. Pp. 41-84. In: Vega, F.E. and R.W. Hofstetter (Eds) Bark Beetles: Biology and Ecology of Native and Invasive Species. Elsevier Inc., San Diego [peer reviewed]
Jordal, B.J., S.M. Smith, and A.I. Cognato. 2014. Classification of weevils as a data-driven science: leaving opinion behind. Zookeys, 439: 1-18.
Olson, R.L.O., R.E. Farris, N.B. Barr, and A.I. Cognato. 2014. Molecular identification of Trogoderma granarium (Coleoptera: Dermestidae) using the 16s gene. Journal of Pest Science, 87:701-710.
Smith, A.D., J.S. Wilson, and A.I. Cognato. 2014. The evolution of Batesian mimicry within the North American Asidini (Coleoptera: Tenebrionidae). Cladistics, DOI: 10.1111/cla.12101.
Stilwell, A.R., S.M. Smith, A.I. Cognato, M. Martinez, W. Flowers. 2014. Coptoborus ochromactonus, n. sp.(Coleoptera: Curculionidae: Scolytinae), an emerging pest of cultivated balsa (Ochroma pyramidale)in Ecuador. Journal of Economic Entomology, 107: 675-683.
Avtzis, D.N. and A. I. Cognato. 2013. Phylogeography and population dynamics of Curculio elephas Gyll. (Coleoptera, Curculionidae), a weevil pest of sweet chestnut, Castanea sativa Mill., in Greece. Journal of Pest Science 86: 491-497.
Cognato, A.I. 2013a. Electroborus brighti, n.gen. & n.sp.: the first Hylesinini bark beetle described from Dominican amber (Curculionidae: Scolytinae). The Canadian Entomologist, 145: 501-508.
Cognato, A.I. 2013b. Molecular phylogeny and taxonomic review of Premnobiini Browne 1962 (Coleoptera: Curculionidae: Scolytinae). Frontiers in Ecology and Evolution 1: 1-12. doi: 10.3389/fevo.2013.00001
Cognato, A.I. and M.F. O’Brien. 2013. The Woodlouse Hunter occurs in Michigan (Araneae: Dysderidae: Dysdera crocata C.L. Koch 1838). The Great Lakes Entomologist 46: 238-239.
Cognato, A.I., R.A. Rabaglia, and N. Vandenberg. 2013. Another Asian ambrosia beetle, Xyleborinus artestriatus (Schedl) (Coleoptera: Curculionidae: Scolytinae) newly found in North America. The Pan– Pacific Entomologist 89: 27-31.
Olson, R.L.O., G.L. Parsons, and A.I. Cognato. 2013. Commercial sex-pheromone lures facilitate collection of skin and carpet beetles (Dermestidae) in natural and urban environments. The Coleopterists Bulletin 67: 370-376.
Smith, S.M. and A. I. Cognato. 2013. A new species of Scolytus and taxonomic changes regarding Neotropical Scolytini (Coleoptera: Curculionidae: Scolytinae). The Coleopterists Bulletin 67: 547-556.
Dole, S.A., B.H. Jordal, and A.I. Cognato. 2009. Polyphyly of Xylosandrus Reitter inferred from nuclear and mitochondrial genes. Molecular Phylogenetics and Evolution, in review. Data Sets (.zip)
Cognato, A.I. and J.H. Sun. 2007. DNA based cladograms augment the discovery of a new Ips species from China (Coleoptera: Curculionidae:Scolytinae). Cladistics 23: 539-551.
Hulcr J., Beaver R., Dole S., Cognato A. 2007: Cladistic review of xyleborine generic taxonomic characters (Coleoptera: Curculionidae: Scolytinae). Systematic Entomology. (doi: 10.1111/j.1365 3113.2007.00386.x) Full text, figures.
Cognato, A.I. 2006. [invited review] Standard percent DNA sequence difference for insects does not predict species boundaries. Journal of Economic Entomology, 99:1037-1045.
Usener, J.L. and A.I. Cognato. 2006. Phylogenetic review of desert firefly taxonomic characters (Coleoptera: Lampyridae: Microphotus ). Insect Systematics and Evolution 37: 71-80. Nexus files: morphology, morphology and molecular.
Gillespie, J.J., Cannone, J.J., Gutell, R.R., & Cognato, A.I. 2004. A Secondary Structural Model of the 28S rRNA Expansion Segments D2 and D3 from Rootworms and Related Leaf Beetles (Coleoptera: Chrysomelidae; Galerucinae). Insect Molecular Biology. Alignment file: HTML or text
Damgaard, J. and A. I. Cognato, 2003. Sources of character conflict in a clade of water striders (Heteroptera: Gerridae). Cladistics 19: 512–526 Full-text PDF, ClustalX guide tree, Nexus file
Cognato, A.I. and A.P. Vogler. 2001. Exploring data interaction and nucleotide alignment in a multiple gene analysis of Ips (Coleoptera: Scolytinae). Systematic Biology 50:758-780.
Cognato, A.I. 2000. Phylogenetic analysis reveals new genus of Ipini bark beetle (Scolytidae). Annals of the Entomological Society of America 93: 362-366.
Foster et al. 2004. DNA-Based identification of the eastern subterranean termite, Reticulitermes flavipes (Isoptera: Rhinotermitidae). 97: 95–101. Journal of Economic Entomology.
Monographs
Smith, S.M. and A.I. Cognato. 2014. A taxonomic monograph of Nearctic ScolytusGeoffroy (Coleoptera, Curculionidae, Scolytinae). Zookeys 450:1-182.
Hulcr, J. and A.I. Cognato. 2013. Xyleborini of New Guinea: taxonomic monograph. Thomas Say Publications in Entomology: Monographs. The Entomological Society of America, Annapolis, MD. 176 pp.
Smith, S.M. and A.I. Cognato. 2010. A Revision of Camptocerus Dejean (Coleoptera: Curculionidae: Scolytinae). Insecta Mundi 148: 1-88.
Dole, S.A. and A.I. Cognato. 2010. Monographic revision of Xylosandrus Reitter (Coleoptera: Curculionidae: Scolytinae). Proceedings of the California Academy of Sciences 61(4): 451-545.